228 Poster Session: Bioengineering

Monday, November 14, 2016: 3:15 PM - 5:45 PM
Grand Ballroom B (Hilton San Francisco Union Square)
This poster session highlights advances in bioengineering research, from both finished and ongoing projects. This includes, but is not limited to, experimental, theoretical, and computational advances in metabolic engineering, protein engineering, synthetic biology, systems biology, and the bioproduction of renewable fuels, chemicals, and pharmaceuticals as well as bioinformatics, bioreactors, fermentation, cell culture, and downstream processing. We encourage the submission of high quality abstracts that describe quantitatively and specifically the research work to be presented.


Adam Melvin
Email: melvin@lsu.edu

Hadley D. Sikes
Email: sikes@mit.edu

Derek Englert
Email: derek.englert@uky.edu

Fei Wen
Email: feiwenum@umich.edu

- indicates paper has an Extended Abstract file available on the online proceeding.

(228ab) Applying Standardized Three-Dimensional Mechanoculture to Multi-Well Plates
Hyun-Woo Sung, Jun-Goo Kwak, Ryan Carpenter and Jungwoo Lee

(228ai) Nanofiltration for Mitigation of Upstream Viral Contamination Risks from Cell Culture Media and Feed
Anna Peterson, Shumin Yang, Jessica Maier, Jack Morel, Kaleb Jentzsch, Kevin Fong and Lia Tescione

(228aj) Production Improvement of Butyrylcholinesterase (BChE) in Rice Cell Lines
Veronica A. Marquez-Escobar, Jasmine Corbin, Somen Nandi and Karen A. McDonald

(228an) Waste Water Treatment Using Field Deployable Macroalgal Tissue Culture
Shishir V Kumar, Ashiqur Rahman, Tsai-Nan Mai, Gregory Rorrer and Clayton S Jeffryes

(228ar) Batch Production of Coenzyme Q By Metabolic Engineered Escherichia coli strains
Patricio Zelada, Alvaro Diaz-Barrera and Irene Martinez

(228au) S.Epidermidis Alters a Fibrin Clot – Insights into Septic Thromboembolism
Tianhui (Maria) MA, Michael J. Solomon and J. Scott Van Epps

(228ay) Prediction of Bacterial Fluxomics Using Machine Learning and Constraint Programming
Gang Wu, Tolutola Oyetunde, Wu Jiang, Kazuyuki Shimizu, Yinjie Tang and Forrest Sheng Bao

(228b) Molecular Basis of 5-Hydroxytryptophan Synthesis in Saccharomyces Cerevisiae
Jiayuan Sheng, Jiantao Zhang, Chaochen Wu and Xueyang Feng

(228bb) Improving Dynamic Regulation of Biodiesel Production in E. coli
Allison Yaguchi, Erika Arvay, Gabriel Rodriguez and Mark Blenner

(228bf) Engineering E. coli for Methanol Metabolism
Benjamin Woolston, Michael Reiter, Jason King and Gregory Stephanopoulos

(228bi) De Novo Biosynthesis of 3,4- Dihydroxybutyric Acid in Engineered Escherichia coli.
Jia Wang, Xiaolin Shen, Rachit Jain, Qipeng Yuan and Yajun Yan

(228bl) Engineering of Microbial Cell Factories for Biobased Chemicals Production
Youyun Liang, Shuobo Shi, Hongfang Zhang, Mingzi M. Zhang, Zihe Liu, Xiaoyun Su, Tong Si, Xiukai Li, Yugen Zhang, Huimin Zhao and Ee Lui Ang

(228bn) Specific siRNA-Target Interactions Influence siRNA Activity
Phillip Angart, Rebecca J. Carlson, Kwasi Adu-Berchie and S. Patrick Walton

(228bq) Hybrid Promoter Engineering for the Development of Novel Promoters Inducible By Lignin Derived Phenolics
Arul Varman, Rhiannon Follenfant, Yone K Lin, Fang Liu, Ryan W Davis and Seema Singh

(228br) Enhancer Control of Transcriptional Bursts
Bomyi Lim, Takashi Fukaya and Michael Levine

(228c) Structural Insights into Catalytic Function of Non-P450 Hydroxylase (HpaB) from Escherichia coli
Xiaolin Shen, Yuheng Lin, Dayong Zhou, Jia Wang, John Rose, Qipeng Yuan and Yajun Yan

(228ca) Selection of CDR-Mimic Peptide By Using Phage Display Method
Miki Yanagisawa, Teppei Niide, Takamitsu Hattori, Hikaru Nakazawa, Izumi Kumagai and Mitsuo Umetsu

(228cb) Rare Residues Mutation Approach for Changing Specificity of Antibody
Junichi Nakayama, Mitsuo Umetsu, Hikaru Nakazawa, Takamitsu Hattori, Izumi Kumagai, Yukinari Kato and Mika K Kaneko

(228cf) Scaleable Assembly and Characterization of Fungal Natural Product Gene Clusters
Colin Harvey, Mancheng Tang, Curt R. Fischer, Yong F. Li, Angela Chu, Joe Horecka, Robert P. St. Onge, Jake Cherry, Molly Miranda, Elizabeth Sattely, Yi Tang and Maureen Hillenmeyer

(228cj) Engineering Red Blood Cell-Based Biosensors for Physiological Monitoring
Taylor Dolberg, Kelly A. Schwarz and Joshua N. Leonard

(228ck) Nicking Mutagenesis: A Plasmid-Based Single-Pot Saturation Mutagenesis Method
Emily Wrenbeck, Justin Klesmith, James A. Stapleton and Tim Whitehead

(228cn) Using Population Balance Models to Learn about the Evolution of Tumor Populations
Adeyinka Lesi, Silja Heilmann, Horacio Rotstein, Richard White and David S. Rumschitzki

(228cs) Antisense RNA Exclusively Regulate Key Genes in Anaerobic Fungi
Kevin V. Solomon, Sean P. Gilmore, John K. Henske and Michelle A. O'Malley

(228db) Antibiotic and Physical Treatments Shift Multispecies Staphylococcal Biofilm Growth Behaviors and Structures
Elizabeth J. Stewart, David Payne, Tianhui (Maria) MA, J. Scott Van Epps, Blaise Boles, John G. Younger and Michael J. Solomon

(228dd) Effect of Sucrose Concentration on Levan Molecular Weight from Different Bacteria
Álvaro González-Garcinuño, Antonio Tabernero, Miguel A. Galan and Eva M. Martín del Valle

(228dh) The Use of Microbiota to Degrade Hydrocarbons
Yair Cruz-Narváez, Enrique Rico, Jose J. Castro-Arellano and Hever Honorato-Cervantes

(228dj) Characterization of Conjugated Polyelectrolytes As Molecular Sensors for the Detection of Amyloids in Neurodegenerative Diseases
Florencia A. Monge, Patrick L. Donabedian, David G. Whitten, Eva Y. Chi, Nicole M. Maphis and Kiran Bhaskar

(228dl) Developing a Sterile and Scalable Polishing Step for a Large Live Virus Purification
Katherine Phillips, Janelle Konietzko, Sheng-Ching Wang, Marc Wenger, Matthew Woodling, Joseph Joyce and Adam Kristopeit

(228dr) Lipidomic and Transcriptomic Biomarkers for Diagnosis of Nonalcoholic Fatty Liver Diseases
Mano R. Maurya, Eoin Fahy, Shakti Gupta, Jun Min and Shankar Subramaniam

(228ds) Silkworm Expression System Suitable for High-Throughput Screening of Antibody Fragment
Mami Shibata, Hikaru Nakazawa, Masahiko Kato, Hidekazu Nagaya, Hideaki Sanada, Izumi Kumagai and Mitsuo Umetsu

(228dt) A Computational Fluid Dynamics Model to Predict Turbulent Flow Damage in Medical Devices
Mesude Ozturk, Edgar A. O'Rear and Dimitrios V. Papavassiliou

(228du) High Throughput Cell Screening Via Luminescent Nanoparticles in a Microfluidic Device
Pragathi Danapaneni, Nora Safabakhsh, Manibarathi Vaithiyanathan, Adam Melvin and James Dorman

(228dv) Nemaflex: A Microfluidic Tool for Measuring Muscle Strength in C. Elegans Across Lifespan
Mizanur Rahman, Jennifer E. Hewitt, Frank V. Bussel, Jerzy Blawzdziewicz, Nathaniel Szewczyk, Monica Driscoll and Siva A. Vanapalli

(228dy) Conformational Landscape of Mutations in the N-Terminus of the aβ1-42 Monomer
Bhanushee Sharma, Srivathsan V. Ranganathan, Brian Murray, Alan Chen and Georges Belfort
File available
(228dz) Challenges in Predicting Protein-Protein Interactions from Measurements of Molecular Diffusivity
Lea L. Sorret, Madison A. DeWinter, Daniel K. Schwartz and Theodore W. Randolph

(228ee) Accurate Structure Prediction of CDR H3 Loops Enabled By a Structure-Based C-Terminal Constraint within Rosetta
Brian D. Weitzner, Nick Marze, Sergey Lyskov, Jeliazko R. Jeliazkov, Daisuke Kuroda, Rahel Frick, Naireeta Biswas and Jeffrey J. Gray

(228ef) Modeling the Aggregation and Oxidation of Therapeutic Proteins
Naresh Chennamsetty, Vishal Nashine, Erinc Sahin, Aaron Yamniuk, Vikram Sadineni and Stanley Krystek

(228eh) Graphene-Based Microfluidics for Serial Microcrystallography
Shuo Sui, Yuxi Wang, Derek MacPherson, Kristopher W Kolewe, Vukica Srajer, Robert Henning, Jessica D. Schiffman, Christos Dimitrakopoulos and Sarah L. Perry

(228ej) Site-Specific DNA Methylation Using Engineered dCas9-Methyltransferases
Tina Xiong, Glenna Meister, Rachael Workman, Nathaniel Kato, Winston Timp, Carl Novina and Marc Ostermeier

(228ek) Bioactive BDNF Expression Using Brevibacillus Choshinensis
Phillip Angart, Rebecca J. Carlson, Sarah Thorwall and S. Patrick Walton

(228en) In Vitro Characterization of a Novel MMP-2 Activatable Peptide for Photoacoustic Lifetime Imaging of Tumor Tissue
Sadie M. Johnson, Ekaterina Morgounova, Michael Wilson, Shai Ashkenazi and Benjamin J. Hackel

(228eo) Inhibitors for Allergic Reactions to Drugs and Other Small Molecules
Peter Deak, Baksun Kim, Maura Vrabel, Tanyel Kiziltepe and Basar Bilgicer

(228ep) Mass Spectrometry-Based Screening for Protein Engineering
Tong Si, Huimin Zhao, Jonathan V. Sweedler and Bin Li

(228eq) Development and Characterization of Collagen Substrates to Study Antimicrobial Peptide Tethering Using QCM-D
Lindsay D. Lozeau, Nicholas R. Bergstrom, Alexandra G. Connor, Marsha W. Rolle and Terri A. Camesano

(228er) Maximizing P-Glycoprotein Expression in the Presence of Certain Therapeutic Compounds
Hope Holt, Elizabeth Moore, Francisco J. Gonzalez-Velasquez and Melissa Moss

(228ew) Domain Library Approach for Designing Therapeutic Small Antibody with High Cytotoxicity for Tumor Cells
Aruto Sugiyama, Mitsuo Umetsu, Hikaru Nakazawa, Ryutaro Asano and Izumi Kumagai

(228fa) Production and Purification of Oxidation-Resistant Alpha-1 Antitrypsin By Transient Expression in N. Benthamiana
David Z. Silberstein, Kalimuthu Karuppanan, Carroll E. Cross, Jason P. Eiserich and Karen A. McDonald

(228fl) Expression and Isolation of a Precious Metal Binding Peptide Useful for Peptide-Directed Nanoparticle Synthesis
Rita Tejada Vaprio, Rudra Palash Mukherjee, Lauren F. Greenlee, Bob Beitle and Nicholas M. Bedford

(228fm) Rapid in Vitro Screening of Proteins with Non-Natural Amino Acids
Song-Min Schinn, William Bradley, Ashtyn Groesbeck and Bradley C. Bundy

(228j) Identifying NAD-Dependent Methanol Dehydrogenases for Synthetic Methylotrophy
Robert K. Bennett, Nicholas R. Sandoval and Eleftherios T. Papoutsakis

(228o) Solution Phase Characterization of [Fe-Fe] Hydrogenase O2 Sensitivity
Jamin Koo, Stacey A. Shiigi, Kunal Mehta, Marcus Rohovie and James R. Swartz

(228r) Integrated Electrochemical-Biological Systems for the Production of Fuels and Chemicals from CO2
Antaeres Antoniuk-Pablant, Joerg Deutzmann, Christopher Hahn, Thomas F. Jaramillo and Alfred M. Spormann

(228t) Investigating Cancer Cell Migration Guided By Stiffness Gradients
Scott Fukuoka, Sabrina Cismas and Prashanth Asuri

(228u) Chitin-Binding Proteins Induce Biomacromolecular Complexation: Inspirations from Insect Cuticle for Hierarchical Self-Assembly
M. Coleman Vaclaw, Patricia A. Sprouse, Saba Ghazvini, Neal T. Dittmer, Michael R. Kanost, Prajnaparamita Dhar and Stevin H. Gehrke

(228v) Production and Kinetics of Metallic Nanoparticles from Phototrophic Cell Culture
Ashiqur Rahman, Shishir V Kumar, Tsai-Nan Mai, Anudeep Kare, Si A. Dahoumane and Clayton S Jeffryes

(228x) Artificial Cellulosome Designed from Cellobiohydrolase Module Library on Streptavidin
Keisuke Murakami, Hikaru Nakazawa, Yuri Ishigaki and Mitsuo Umetsu

Biocatalysis & Biobased Products

Biopharmaceutical Manufacturing

Metabolic Engineering

Synthetic Biology

Systems Biology

Bioprocess and Downstream Processing

Protein Science and Engineering
See more of this Group/Topical: Food, Pharmaceutical & Bioengineering Division
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