467886 Flux Balance Analysis and Crispr/Cas9-Facilitated Genetic Modification for the Increased Production of Beta-Carotene in Recombinant Saccharomyces Cerevisiae

Thursday, November 17, 2016: 12:30 PM
Continental 9 (Hilton San Francisco Union Square)
Melanie DeSessa1, Jonathan P. Raftery2 and M. Nazmul Karim2, (1)Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, (2)Chemical Engineering, Texas A&M University, College Station, TX

Carotenoids are an important group of molecules found in many biological systems. They are a precursor to vitamin A and are used in vitamins, supplements, and food dyes. Carotenoids are produced naturally in plants in low quantities, and chemical synthesis is not a viable option, so overproducing this molecule in organisms such as yeast is the most economical choice in an increasing global market. Previous work has been done to insert genes from yeast species Xanthophyllomyces dendrorhous into Saccharomyces cerevisiae and to determine that S. cerevisiae is an appropriate host to produce a particular carotenoid, beta-carotene1. This S. cerevisiae strain has been further developed using directed evolution and an increase in beta-carotene production has been seen2. This work will focus on two metabolic engineering strategies to continue to increase the production of beta-carotene and improve understanding of the yeast strain and the production process.

First, the substrate utilization and beta-carotene production through the use of a metabolic flux model of S. cerevisiae is examined3. This model is modified to include the additional beta-carotene-producing reactions as well as experimentally determined substrate utilization. Flux variance analysis is used to further refine the model to accurately depict the glucose and ethanol metabolism in the yeast strain. The results from this model, along with previously obtained experimental bioreactor data, will be used to determine the system state that exhibits the highest production of beta-carotene. In addition, this refined intracellular model is combined with a previously developed extracellular kinetic model leading to dynamic predictions of all intracellular metabolite fluxes.

A second strategy looks to improve beta-carotene productivity through the targeted deletion of cellular pathways. Utilizing the OptKnock functionality of the COBRA Matlab toolbox in conjunction with the modified metabolic flux model, it is possible to identify individual genes and groups of genes whose absence could lead to higher beta-carotene productivity4. Potential knockout genes targeted by OptKnock include several genes involved in the conversion of pyruvate and acetate, key intermediates in both the growth and beta-carotene production pathways. In order to confirm these results experimentally, several of these genes are disrupted using a CRISPR/Cas-9 method5. The effects of these genetic disruptions, particularly regarding cellular growth and beta-carotene productivity will be emphasized.

1Verwaal et al., App. and Env. Microbiology, 73, 4342-4350 (2007)

2Reyes et al., Metabolic Engineering, 21, 26-33 (2014)

3Herrgård et al, Nat Biotechnol., 26, 1155-1160 (2008)

4Burgard et al., Biotech. and Bioeng., 84, 647-657 (2003)

5Bao et al., ACS Synthetic Biology, 4, 585-594 (2015)

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