Tuesday, November 14, 2006: 3:15 PM-5:45 PM
Imperial B (Hilton San Francisco)
#284 - In Silico Systems Biology III (TA009)
A critical component of systems biology is the development of in silico approaches to understand systems of interest. For this session, papers discussing novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are welcome. Research including experimental work is particularly encouraged.
Chair:Ranjan Srivastava
Cochairs:Jeffrey D. Varner
Christina Chan
Mariajose Castellanos
3:15 PMModeling the ErbB Signaling Network in MCF-7 Breast Cancer Cells and Analysis of Ligand-Dependent Responses
Marc R. Birtwistle, Mariko Hatakeyama, Noriko Yumoto, Jan B. Hoek, Boris N. Kholodenko, Babatunde A. Ogunnaike
3:34 PMSimulation of Non-Specific Protein-Mrna Interactions in the Eif4f Translation Initiation Factor Complex
James Magee, Jim Warwicker
3:53 PMA General Model for Ultrasensitivity Arising from Single Protein Multisite Modifications
Xiaoxia (Nina) Lin, Yuan Gao, Yaoyun Shi, George M. Church
4:12 PMSpatial Organization of Egf Receptors and Its Implications for Signaling
Kapil Mayawala, Dionisios G. Vlachos, Jeremy S. Edwards
4:31 PMBreak
4:50 PMHow T Cells Hunt for Antigen in Lymphoid Tissue
Bo Jin, Alan S. Perelson, Arup K. Chakraborty
5:09 PMFrom Ligand Binding to Transcription Activation: Insilico Simulation of Tumor Necrosis Factor-Induced Nuclear Factor Kappa B Activation Using Ibrena Software Package
Gang Liu, Sriram Neelamegham
5:27 PMAntigen Quality Regulates Signaling and Degradation in the Immunological Synapse
Jayajit Das, Saso Cemerski, Jason W. Locasale, Phoebe Arnold, Daved Fremont, Paul Allen, Andrey S. Shaw, Arup K. Chakraborty

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