This preliminary program is subject to change.

Advances in Metabolic Engineering I


Description:
This session focuses on computational and in silico advances in metabolic engineering. Approaches for designing, understanding and analyzing metabolic and regulatory pathways will be emphasized as tools for providing insights for metabolic engineering of cells and organisms. This session differs from other metabolic engineering sessions, as it places greater emphasis on computational approaches for designing components, pathways, data integration and analysis. Examples include, but are not limited to, development of models (eg. genome-scale or kinetic), advances in metabolic flux analysis (including isotope label-based approaches), deduction of gene regulatory networks, bioinformatics, and methodologies to integrate and analyze ’omics datasets.

Sponsor:
Bioengineering


Chair:
Jennifer L. Reed
Assistant Professor
UW Madison
Chemical & Biological Engineering
1415 Engineering Dr.
Madison, WI 53706
Phone Number: (608)262-0188
Email: reed@engr.wisc.edu

Co-Chair:
Ganesh Sriram

Papers:
Automated Generation of Complete Atom Mappings for MFA Using Genome-Scale Metabolic Reconstruction
Prabhasa Ravikirthi, The Pennsylvania State University; Patrick F. Suthers, The Pennsylvania State University; Costas D. Maranas, The Pennsylvania State University
Tandem Mass Spectrometry: A Novel Approach for Metabolic Flux Analysis
Maciek R. Antoniewicz, Univerisity of Delaware; Jungik Choi, Univerisity of Delaware
A Weighted Graph Algorithm for Identifying Dominant Metabolic Pathways
Ehsan Ullah, Tufts University; Mark A. Walker, Tufts University; Kyongbum Lee, Tufts University; Soha Hassoun, Tufts University
Rational Optimization of Synthetic Metabolic Pathways with the Ribosome Binding Site Calculator
Howard Salis, UC San Francisco; Christopher Voigt, University of California San Francisco
Hybrid Cybernetic Modeling of Poly-Beta-Hydroxybutyrate Synthesis and Degradation in Cupriavidus Necator
André Franz, Max-Planck-Institute for Dynamics of Complex Technical Systems; Hyun-Seob Song, Purdue University; Achim Kienle, Max-Planck-Institute for Dynamics of Complex Technical Systems; Doraiswami Ramkrishna, Purdue University
Understanding Mechanisms of Conazole Toxicity in Cultured Hepatocytes
Vidya V. Iyer, Rutgers University; Marianthi G. Ierapetritou, Rutgers University; Charles M. Roth, Rutgers University
Multi-Scale Engineering of Heterologous Polyketide and Isoprenoid Natural Products in Escherichia Coli
Brett A. Boghigian, Tufts University; Yong Wang, East China University of Science and Technology; Daniel Salas, Tufts University; Haoran Zhang, Tufts University; Kyongbum Lee, Tufts University; Gregory N. Stephanopoulos, Massachusetts Institute of Technology; Blaine A. Pfeifer, Tufts University
See more of this Group/Topical: Food, Pharmaceutical & Bioengineering Division