A High Resolution Side Chain Centroid Based Distance Dependent Force Field - Effect of Protein Side Chain Interactions
Rohit Rajgaria, Scott R. McAllister and Christodoulos A. Floudas, Chemical Engineering, Princeton University, Dept of Chemical Engineering; A215 Engineering Quadrangle, Princeton, NJ 08544 |
Circadian Phase Entrainment Via Nonlinear Model Predictive Control
Neda Bagheri, Department of Electrical & Computer Engineering, University of California - Santa Barbara, Santa Barbara, CA 93106-9560, Jörg Stelling, Institute of Computational Science, ETH-Zentrum, Zurich, Switzerland and Francis J. Doyle III, Department of Chemical Engineering, University of California - Santa Barbara, Santa Barbara, CA 93106-5080 |
Sensitivity Analysis-Based Approach for Identifying Key Steps in Cell Signaling for Hepatocytes Stimulated by Il-6
Yunfei Chu1, Abhay K. Singh1, Arul Jayaraman1 and Juergen Hahn2, (1)Department of Chemical Engineering, Texas A& M University, College Station, TX 77843-3122, (2)Department of Chemical Engineering, Texas A&M University, College Station, TX 77843-3122 |
Parameter Estimation for Stochastic Models: Application to Genetic Networks
Christopher V. Rao, Department of Chemical and Biomolecular Engineering, University of Illinois, 600 South Matthews Ave., 211 Roger Adams Laboratory, Box C-3, Urbana, IL 61801 |
Mocat: an Algorithm for Learning Boolean Functions from Noisy Data and Its Application to Learning Interacting Residues in a Protein
Anshul Dubey, School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, 311 Ferst Dr, Atlanta, GA 30332, Matthew J. Realff, Chemical and Biomolecular Engineering, Georgia Tech, 311 Ferst Drive, N.W., Atlanta, GA 30332-0100, Jay H. Lee, Chemical and Biomolecular Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building 311 Ferst Drive, N.W., Atlanta, GA 30332 and Andreas S. Bommarius, Georgia Institute of Technology, School of Chemical Engineering, 315 Ferst Drive N.W., Parker H. Petit Biotechnology Institute, Room 3310, Atlanta, GA 30332-0363 |
Structural Analysis of Biological Regulatory Networks
Sridharakumar Narasimhan, Clarkson University, Box 5707, Clarkson University, Potsdam, NY 13699-5707, Raghunathan Rengaswamy, Chemical Engineering, Clarkson University, Box 5705, Clarkson University, Potsdam, NY 13699-5705 and Rajanikanth Vadigepalli, Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University, 1020 Locust St Room 575, Philadelphia, PA 19107 |
Equation-Free Analysis of Gene Regulatory Networks
Thomas A. Frewen1, Yannis G. Kevrekidis1, Timothy C. Elston2 and Radek Erban3, (1)Department of Chemical Engineering, Princeton University, Engineering Quadrangle, Princeton, NJ 08544, (2)Department of Pharmacology, University of North Carolina, Chapel Hill, NC 27599, (3)Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford, United Kingdom |
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