Preliminary Program subject to change
BEC303 Computational Systems Biology
OverviewA critical component of systems biology is the development of in-silico approaches to understand systems of interest. For this session, papers discussing novel uses of in-silico methods to understand biological systems, as well as the development of new technologies and algorithms for in-silico systems analysis are welcome. Research integrating experimental work and in-silico approaches is also particularly encouraged.
Primary SponsorSystems Biology and Multi-scale Integration (BEC3)

Chair

Jeffrey D. Varner
Assistant Professor
Department of Chemical and Biomolecular Engineering
Cornell University
244 Olin Hall
Ithaca, NY 14850
Phone Number: 607-255-4258
Email: jdv27@cornell.edu

CoChair

Anthony Burgard
Genomatica, Inc.
5405 Morehouse Drive Suite 210
San Diego, CA 92121
Phone Number: 858-362-8562
Fax Number: 858-824-1772
Email: aburgard@genomatica.com
Using Dynamic Analysis of Module Mapping to Identify Targets That Modulate Free Fatty Acids and Tumor Necrosis Factor (Tnf)-a Induced Cytotoxicity
Zheng Li1, Shireesh Srivastava2, Robert Findland1 and Christina Chan3, (1)Department of Chemical Engineering and Material Science, Michigan State University, 2527 Engineering Building, East Lansing, MI 48824, (2)Michigan State University, 2527 Engineering Building, East Lansing, MI 48824, (3)Chemical Engineering and Material Science, Michigan State University, 2527 Engineering Building, East Lansing, MI 48824
Reverse Engineering Regulatory Networks to Determine Mode of Action and Efficacy Markers for Multi Targeted-Kinase Inhibitors
Colin Hill, Gene Network Sciences, 10 Canal Park, Cambridge, MA 02141
Combining Computational and Experimental Methods to Identify Genes with Metabolic Functions
Jennifer L. Reed1, Trina R. Patel1, Keri H. Chen1, Andrew R. Joyce1, Margaret K. Applebee2, Christopher D. Herring1, Olivia T. Bui1, Eric M. Knight1, Stephen S. Fong3 and Bernhard O. Palsson4, (1)Bioengineering, University of California, San Diego, La Jolla, CA 92093-0412, (2)Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0412, (3)Department of Chemical and Life Science Engineering, Virginia Commonwealth University, Richmond, VA 23284-3028, (4)Bioengineering, UCSD, 9500 Gilman Dr. Mailcode 0412, La Jolla, CA 92093-0412
Multiscale Simulation of Biochemical Systems
Linda Petzold, University of California Santa Barbara, Department of Computer Science, Santa Barbara, CA 93106

General Submissions